16 Jun 2026

Senior Bioinformatics Engineer

Toronto, ON

Agilus by Synergie is recruiting for a Senior Bioinformatics Engineer in the Health Sciences in a hybrid work environment in Toronto, Ontario.
Our client is seeking an experienced Bioinformatics Engineer who enjoys operating at the intersection of software engineering, data science, and computational biology. Unlike traditional laboratory-focused positions, this role emphasizes building scalable computational solutions, data workflows, and analytical platforms that support advanced scientific and clinical research initiatives. This is an ideal opportunity for someone who is deeply technical and enjoys solving complex data challenges.
A typical day:

Develop and optimize computational pipelines for large-scale biological and clinical datasets.
Design and maintain cloud-based analysis workflows.
Build tools and platforms that enable researchers and scientists to work more efficiently.
Collaborate with software engineers, researchers, and domain experts.
Improve data quality, reproducibility, and scalability across analytical environments.
Contribute to technical strategy and architecture discussions.
Stay current with emerging technologies and methods in computational biology and bioinformatics.

Successful candidates will have:

Experience working with genomic, clinical, or biomedical datasets.
Experience with workflow orchestration tools and cloud platforms.
Exposure to machine learning, AI, or advanced analytics.
Experience in highly collaborative research environments.
Background in bioinformatics, computational biology, computer science, data science, or a related discipline.
Experience working with large datasets in cloud or high-performance computing environments.
Strong understanding of software engineering principles and version control practices.

Total rewards:

$130000.00 - $200000.00 annually

An ideal candidate has:

Strong programming skills in Python, R, Java, Scala, or similar languages.
Experience developing production-grade data pipelines and workflows.

This posting is for an active opening.

Interested?
Please apply directly online

Agilus by Synergie would like to thank all candidates for their interest in this opportunity. Due to the volume of resumes we receive; we may only be able to respond directly to those candidates being selected for an interview.
We encourage you to visit agilus.ca regularly or subscribe to our email alerts at agilus.ca/Account/Register as new exciting employment opportunities become available daily.

Job Code 155570

We value a diverse workplace.

Agilus by Synergie is committed to employ people from diverse backgrounds and we actively demonstrate inclusiveness through fair, equitable and accessible hiring practices. We recognize the strength that comes from different experiences, backgrounds and perspectives and welcome candidates who identify as visible minorities, Indigenous people, persons with disabilities, and persons within the LGBTQ+ community. We feel it is important as an organization that all people have access and opportunity to be employed, to be valued and to be respected.

Our recruiting process is human-centric and supported by AI. Our AI assistant may reach out to applicants for a prescreen. All results will be reviewed and evaluated by our Canadian based, human recruiting team.

Accommodations for job applicants with disabilities will be provided upon request during the recruitment, assessment, selection and placement process. Alternative format available on Request.